Daily Papers

Grokking, i.e., test performance keeps improving long after training loss converged, has been recently witnessed in neural network training, making the mechanism of generalization and other emerging capabilities such as reasoning mysterious. While prior studies usually train small models on a few toy or highly-specific tasks for thousands of epochs, we conduct the first study of grokking on checkpoints during one-pass pretraining of a 7B large language model (LLM), i.e., OLMoE. We compute the training loss and evaluate generalization on diverse benchmark tasks, including math reasoning, code generation, and commonsense/domain-specific knowledge retrieval tasks. Our study, for the first time, verifies that grokking still happens in the pretraining of large-scale foundation models, though different data may enter grokking stages asynchronously. We further demystify grokking's "emergence of generalization" by investigating LLM internal dynamics. Specifically, we find that training samples' pathways (i.e., expert choices across layers) evolve from random, instance-specific to more structured and shareable between samples during grokking. Also, the complexity of a sample's pathway reduces despite the converged loss. These indicate a memorization-to-generalization conversion, providing a mechanistic explanation of delayed generalization. In the study, we develop two novel metrics to quantify pathway distance and the complexity of a single pathway. We show their ability to predict the generalization improvement on diverse downstream tasks. They are efficient, simple to compute and solely dependent on training data. Hence, they have practical value for pretraining, enabling us to monitor the generalization performance without finetuning and test. Theoretically, we show that more structured pathways reduce model complexity and improve the generalization bound.

Synthetic gene expression data is increasingly proposed as a privacy-preserving substitute for controlled-access genomic repositories, but its safety depends on empirical auditing. Membership inference attacks (MIAs) provide that audit by testing whether a patient's gene expression profile was used to train a generative model. We report a red-team study on synthetic gene expression data derived from bulk RNA-seq profiles in The Cancer Genome Atlas, released by the ELSA Health 2026 Challenge. We unify five no-box attacks under a single weighted-distance framework in which each variant differs only in how it weights genes: uniformly (baseline), by variance, by synthetic-versus-reference KL divergence, by spectral residualization removing dominant principal components, and by curated pathway membership. Against a conditional variational autoencoder, spectral residualization raises AUC from 0.8251 to 0.8951 and TPR at 1% FPR from 0.3842 to 0.5970 on pan-cancer TCGA. Biological pathway priors did not transfer across targets.

Rotary Position Embeddings (RoPE) make attention scores position-relative but leave the value pathway position-blind: the message sent by a value token is the same regardless of its distance from the query. We propose RoVE, a parameter-free modification that makes values position-sensitive by rotating them simultaneously with keys, and show that it turns RoPE attention into attentive convolution. This new perspective unifies several independent formulations of the same operation across computer vision, robotics, and modern LLM architectures. Trained 124M and 354M GPT-2 models show consistent empirical gains over RoPE on few-shot in-context learning, out-of-distribution perplexity, and long-context retrieval, with the clearest improvements on tasks that require long-range aggregation.

While autoregressive Large Vision-Language Models (LVLMs) demonstrate remarkable proficiency in multimodal tasks, they face a "Visual Signal Dilution" phenomenon, where the accumulation of textual history expands the attention partition function, causing visual attention to decay inversely with generated sequence length. To counteract this, we propose Persistent Visual Memory (PVM), a lightweight learnable module designed to ensure sustained, on-demand visual perception. Integrated as a parallel branch alongside the Feed-Forward Network (FFN) in LVLMs, PVM establishes a distance-agnostic retrieval pathway that directly provides visual embeddings for precise visual perception, thereby structurally mitigating the signal suppression inherent to deep generation. Extensive experiments on Qwen3-VL models demonstrate that PVM brings notable improvements with negligible parameter overhead, delivering consistent average accuracy gains across both 4B and 8B scales, particularly in complex reasoning tasks that demand persistent visual perception. Furthermore, in-depth analysis reveals that PVM can resist length-induced signal decay and accelerate internal prediction convergence.

Route Recommendation (RR) is a core task in route planning within online navigation applications, aiming to recommend the optimal route among candidate routes to users. Industrially, RR adopts the two-stage recall-and-rank framework instead of traditional route planning algorithms primarily for computational efficiency. However, RR fundamentally differs from traditional recommendation systems that follow this paradigm. First, a primary challenge is that route items cannot be assigned unique identifiers. Additionally, RR fundamentally differs from traditional recommendation systems in its approach to feature interaction. These differences render conventional recommendation approaches inadequate for route recommendation scenarios, necessitating specialized methods that can effectively handle route-specific challenges. To address these challenges, we propose a novel method called Comprehensive Comparison Network (CCN) for route recommendation. CCN constructs comparative features by comparing non-overlapping segments between route pairs, enabling difference learning without the infinite scalability issues of ID embeddings. Furthermore, CCN employs a specially designed Comprehensive Comparison Block (CCB) that differs from previous item attention methods to achieve effective cross-interaction between routes using comparison-level features. Moreover, we develop an interpretable Pair Scoring Network (PSN) for route recommendation and introduce a more comprehensive route recommendation dataset to advance research in this field. Experimental results demonstrate the effectiveness of our method, and CCN has been successfully deployed in AMAP for over a year, demonstrating its value in route recommendation.

Small language models (SLMs) are increasingly paired with knowledge graphs (KGs), yet end-to-end KG question answering conflates graph access, search, navigation, reasoning, and answer generation. This coupling makes it difficult both to determine whether an SLM can faithfully execute the reasoning path implied by a question and to attribute failures to navigation rather than to other stages of the pipeline. We isolate this capability by employing the THESEUS navigation and traceability framework and using frozen, off-the-shelf SLMs as local action policies. At each hop, the environment exposes the legal outgoing graph actions, and the model selects one executable graph action and decides whether to stop, without task-specific parameter updates, model-controlled beam search, or free-form answer generation. This controlled setting allows us to evaluate terminal-answer accuracy with Hits@1 together with path fidelity, using Path Edit Distance (PED) as the primary trajectory metric. Across the Kinship and MQuAKE-ST KGQAs, similarly sized local models differ substantially in answer accuracy and path fidelity, with the two metrics sometimes favoring different models. This model-dependent behavior also extends to prompting, as a single demonstrated trajectory can improve or degrade navigation depending on the model. These results motivate evaluating SLM graph reasoning beyond endpoint accuracy alone.

Computing distances and finding shortest paths in massive real-world networks is a fundamental algorithmic task in network analysis. There are two main approaches to solving this task. On one hand are traversal-based algorithms like bidirectional breadth-first search (BiBFS) with no preprocessing step and slow individual distance inquiries. On the other hand are indexing-based approaches, which maintain a large index. This allows for answering individual inquiries very fast; however, index creation is prohibitively expensive. We seek to bridge these two extremes: quickly answer distance inquiries without the need for costly preprocessing. In this work, we propose a new algorithm and data structure, WormHole, for approximate shortest path computations. WormHole leverages structural properties of social networks to build a sublinearly sized index, drawing upon the explicit core-periphery decomposition of Ben-Eliezer et al. Empirically, the preprocessing time of WormHole improves upon index-based solutions by orders of magnitude, and individual inquiries are consistently much faster than in BiBFS. The acceleration comes at the cost of a minor accuracy trade-off. Nonetheless, our empirical evidence demonstrates that WormHole accurately answers essentially all inquiries within a maximum additive error of 2. We complement these empirical results with provable theoretical guarantees, showing that WormHole requires n^{o(1)} node queries per distance inquiry in random power-law networks. In contrast, any approach without a preprocessing step requires n^{Ω(1)} queries for the same task. WormHole does not require reading the whole graph. Unlike the vast majority of index-based algorithms, it returns paths, not just distances. For faster inquiry times, it can be combined effectively with other index-based solutions, by running them only on the sublinear core.

The paper proposes a novel machine learning-based approach to the pathfinding problem on extremely large graphs. This method leverages diffusion distance estimation via a neural network and uses beam search for pathfinding. We demonstrate its efficiency by finding solutions for 4x4x4 and 5x5x5 Rubik's cubes with unprecedentedly short solution lengths, outperforming all available solvers and introducing the first machine learning solver beyond the 3x3x3 case. In particular, it surpasses every single case of the combined best results in the Kaggle Santa 2023 challenge, which involved over 1,000 teams. For the 3x3x3 Rubik's cube, our approach achieves an optimality rate exceeding 98%, matching the performance of task-specific solvers and significantly outperforming prior solutions such as DeepCubeA (60.3%) and EfficientCube (69.6%). Additionally, our solution is more than 26 times faster in solving 3x3x3 Rubik's cubes while requiring up to 18.5 times less model training time than the most efficient state-of-the-art competitor.

Path-finding over knowledge graphs has become an effective way to ground LLM reasoning on multi-hop questions. However, biomedical QA introduces two distinct challenges that general-domain methods are not designed for: (i) queries do not expose intermediate reasoning and can be answered through multiple valid pathways, and (ii) biomedical knowledge graphs are densely connected, so path-finding methods easily take wrong turns. To address these challenges, we propose AdaPath, a path-finding framework that retrieves query-adaptive meta-paths from Path-Bank, which captures both query semantics and biomedical knowledge graph structure. AdaPath provides the missing cues in biomedical queries while effectively pruning dense knowledge graph neighborhoods during multi-hop reasoning. We further release BioStrat-QA, a biomedical KGQA benchmark that stratifies multi-hop queries by how much intermediate reasoning they expose. Across biomedical KGQA benchmarks, AdaPath consistently outperforms baselines, sustaining meaningful path-finding even when multi-hop queries expose less surface information. The source code is available at https://github.com/Jun-Hyeong-Kim/AdaPath.

Inferring the full transportation network, including sidewalks and cycleways, is crucial for many automated systems, including autonomous driving, multi-modal navigation, trip planning, mobility simulations, and freight management. Many transportation decisions can be informed based on an accurate pedestrian network, its interactions, and connectivity with the road networks of other modes of travel. A connected pedestrian path network is vital to transportation activities, as sidewalks and crossings connect pedestrians to other modes of transportation. However, information about these paths' location and connectivity is often missing or inaccurate in city planning systems and wayfinding applications, causing severe information gaps and errors for planners and pedestrians. This work begins to address this problem at scale by introducing a novel dataset of aerial satellite imagery, street map imagery, and rasterized annotations of sidewalks, crossings, and corner bulbs in urban cities. The dataset spans 2,700 km^2 land area, covering select regions from 6 different cities. It can be used for various learning tasks related to segmenting and understanding pedestrian environments. We also present an end-to-end process for inferring a connected pedestrian path network map using street network information and our proposed dataset. The process features the use of a multi-input segmentation network trained on our dataset to predict important classes in the pedestrian environment and then generate a connected pedestrian path network. Our results demonstrate that the dataset is sufficiently large to train common segmentation models yielding accurate, robust pedestrian path networks.

Risk-aware planners score paths on uncertain elevation maps using the path cost's mean and standard deviation. Modeling rigid contact, however, requires computing a maximum over several uncertain cells. First-order propagation loses accuracy here by differentiating at only a single cell, while Monte Carlo sampling requires a full path evaluation per draw. We compute the moments of that contact maximum in closed form using Clark's pairwise recursion. By tracking each contact's covariance against the shared map cells, we propagate the smooth remainder using exact Gaussian quadratic-form identities. A contest-depth calibration, fitted once on two design traverses, closes the aggregate standard-deviation shortfall that remains. On 317 held-out rover path segments, scored against a Monte Carlo reference from the same belief, every pre-registered criterion was met. The corrected Clark fold cuts the median error of the mean from linearization's 2.3% to 0.19% and attains the lowest error in the conditional value at risk (CVaR) at the 90% level of every method tested. A benchmark plan costs just 5.5 microseconds on a GPU. These accuracy gains concentrate at contested contacts. While they seldom change which path is chosen on this terrain, the fold still selects the reference-best path in 98% of decisions against linearization's 93 to 96%. On a second dataset the mean transfers, though the risk number does not.

Biologically-informed neural networks typically leverage pathway annotations to enhance performance in biomedical applications. We hypothesized that the benefits of pathway integration does not arise from its biological relevance, but rather from the sparsity it introduces. We conducted a comprehensive analysis of all relevant pathway-based neural network models for predictive tasks, critically evaluating each study's contributions. From this review, we curated a subset of methods for which the source code was publicly available. The comparison of the biologically informed state-of-the-art deep learning models and their randomized counterparts showed that models based on randomized information performed equally well as biologically informed ones across different metrics and datasets. Notably, in 3 out of the 15 analyzed models, the randomized versions even outperformed their biologically informed counterparts. Moreover, pathway-informed models did not show any clear advantage in interpretability, as randomized models were still able to identify relevant disease biomarkers despite lacking explicit pathway information. Our findings suggest that pathway annotations may be too noisy or inadequately explored by current methods. Therefore, we propose a methodology that can be applied to different domains and can serve as a robust benchmark for systematically comparing novel pathway-informed models against their randomized counterparts. This approach enables researchers to rigorously determine whether observed performance improvements can be attributed to biological insights.

Quantifying the similarity between a group of companies has proven to be useful for several purposes, including company benchmarking, fraud detection, and searching for investment opportunities. This exercise can be done using a variety of data sources, such as company activity data and financial data. However, ledger account data is widely available and is standardized to a large extent. Such ledger accounts within a financial statement can be represented by means of a tree, i.e. a special type of graph, representing both the values of the ledger accounts and the relationships between them. Given their broad availability and rich information content, financial statements form a prime data source based on which company similarities or distances could be computed. In this paper, we present a graph distance metric that enables one to compute the similarity between the financial statements of two companies. We conduct a comprehensive experimental study using real-world financial data to demonstrate the usefulness of our proposed distance metric. The experimental results show promising results on a number of use cases. This method may be useful for investors looking for investment opportunities, government officials attempting to identify fraudulent companies, and accountants looking to benchmark a group of companies based on their financial statements.

Sampling-based kinodynamic planners, such as Rapidly-exploring Random Trees (RRTs), pose two fundamental challenges: computing a reliable (pseudo-)metric for the distance between two randomly sampled nodes, and computing a steering input to connect the nodes. The core of these challenges is a Two Point Boundary Value Problem, which is known to be NP-hard. Recently, the distance metric has been approximated using supervised learning, reducing computation time drastically. The previous work on such learning RRTs use direct optimal control to generate the data for supervised learning. This paper proposes to use indirect optimal control instead, because it provides two benefits: it reduces the computational effort to generate the data, and it provides a low dimensional parametrization of the action space. The latter allows us to learn both the distance metric and the steering input to connect two nodes. This eliminates the need for a local planner in learning RRTs. Experimental results on a pendulum swing up show 10-fold speed-up in both the offline data generation and the online planning time, leading to at least a 10-fold speed-up in the overall planning time.