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Update README.md

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  1. README.md +6 -6
README.md CHANGED
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  library_name: transformers
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  base_model: duttaprat/HViLM-base
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  datasets:
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- - duttaprat/HVUE-v2
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  pipeline_tag: text-classification
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  tags:
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  - genomics
@@ -10,7 +10,7 @@ tags:
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  - dna
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  - virus
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  - pathogenicity
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- - hvue-v2
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  license: apache-2.0
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  ---
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  **HViLM-Patho** is the official HViLM model for binary virus pathogenicity classification.
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  - **Fine-tuned from:** [duttaprat/HViLM-base](https://huggingface.co/duttaprat/HViLM-base)
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- - **Benchmark:** [duttaprat/HVUE-v2](https://huggingface.co/datasets/duttaprat/HVUE-v2)
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- - **HVUE v2 configuration:** `Pathogenicity/standard_capped_1000bp`
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  - **Checkpoint selection:** best validation F1 (`checkpoint-3000`)
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  - **Input:** virus nucleotide sequence
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  - **Output:** non-pathogenic vs. pathogenic
@@ -36,7 +36,7 @@ This repository contains a **standalone full fine-tuned checkpoint**, so users c
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  ## Performance
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- Held-out HVUE v2 test set, standard 1000-nt configuration:
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  | Metric | Score |
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  |---|---:|
@@ -100,7 +100,7 @@ HViLM-Patho is intended for research on virus sequence representation and comput
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  - [HViLM-base](https://huggingface.co/duttaprat/HViLM-base)
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  - [HViLM-R0](https://huggingface.co/duttaprat/HViLM-R0)
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  - [HViLM-Tropism](https://huggingface.co/duttaprat/HViLM-Tropism)
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- - [HVUE-v2](https://huggingface.co/datasets/duttaprat/HVUE-v2)
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  - [HViLM GitHub repository](https://github.com/duttaprat/HViLM)
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  ## Citation
 
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  library_name: transformers
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  base_model: duttaprat/HViLM-base
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  datasets:
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+ - duttaprat/HVUE
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  pipeline_tag: text-classification
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  tags:
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  - genomics
 
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  - dna
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  - virus
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  - pathogenicity
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+ - hvue
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  license: apache-2.0
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  ---
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  **HViLM-Patho** is the official HViLM model for binary virus pathogenicity classification.
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  - **Fine-tuned from:** [duttaprat/HViLM-base](https://huggingface.co/duttaprat/HViLM-base)
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+ - **Benchmark:** [duttaprat/HVUE](https://huggingface.co/datasets/duttaprat/HVUE)
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+ - **HVUE configuration:** `Pathogenicity/standard_capped_1000bp`
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  - **Checkpoint selection:** best validation F1 (`checkpoint-3000`)
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  - **Input:** virus nucleotide sequence
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  - **Output:** non-pathogenic vs. pathogenic
 
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  ## Performance
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+ Held-out HVUE test set, standard 1000-nt configuration:
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  | Metric | Score |
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  |---|---:|
 
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  - [HViLM-base](https://huggingface.co/duttaprat/HViLM-base)
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  - [HViLM-R0](https://huggingface.co/duttaprat/HViLM-R0)
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  - [HViLM-Tropism](https://huggingface.co/duttaprat/HViLM-Tropism)
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+ - [HVUE](https://huggingface.co/datasets/duttaprat/HVUE)
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  - [HViLM GitHub repository](https://github.com/duttaprat/HViLM)
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  ## Citation